ExperimentSetReplicate

ExperimentSet4DNESUCLJAZ8
released

in situ Hi-C on mouse embryonic stem cell unsorted cells

   August 12th, 2019 at 2:59pm
Source Publication
Multiscale 3D Genome Rewiring during Mouse Neural Development.
Bonev B, Mendelson Cohen N, et al., Cell 2017

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
mESC line with Oct4-GFP
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUCLJAZ8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIUHKXYYK
124.1m
65.687%
21.634%
12.679%
Experiment
4DNEXBBP5WX1
Bio Rep 1, Tec Rep 1
in situ Hi-C on mESC line with Oct4-GFP with DpnII
File
Contact List-replicate (pairs)
4DNFI8HX3OB2
124.1m
65.687%
21.634%
12.679%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXBBP5WX1
Bio Rep 1, Tec Rep 1
in situ Hi-C on mESC line with Oct4-GFP with DpnII
File
Alignments (bam)
4DNFI7ZIZB2U
184.71m
8.016%
22.956%
1.835%
0.004%
0.064%