ExperimentSetReplicate

ExperimentSet4DNESPDEZNWX
released

In situ Hi-C WTC derived iPS cells, for comparison with Micro-C experiments.

   November 5th, 2019 at 2:41pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
induced pluripotent stem cell
Biosource 
WTC-11 AAVS1-GFP C28
Experiment Type(s) 
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: DpnII

5 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPDEZNWX
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIYPN1VAE
1.31 billion
33.147%
18.328%
48.526%
Experiment
4DNEXRG8FA7T
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 AAVS1-GFP C28 with DpnII
File
Contact List-replicate (pairs)
4DNFII7SZMOA
1.31 billion
33.147%
18.328%
48.526%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXRG8FA7T
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 AAVS1-GFP C28 with DpnII
File
Alignments (bam)
4DNFIH1DHUO9
3.02 billion
15.787%
22.35%
18.587%
0.01%
0.13%