ExperimentSetReplicate

ExperimentSet4DNESH4UTRNL
released

HiC from mature olfactory sensory neurons expressing Olfr1507

   March 19th, 2018 at 8:04pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
primary cell
Biosource 
olfactory receptor cell
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESH4UTRNL
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI5AFARSZ
2.02 billion
43.002%
18.341%
38.657%
Experiment
4DNEXOHPSJTN
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFI3CBEV3I
499.65m
45.927%
21.253%
32.819%
Experiment
4DNEX4KRGMAQ
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFI72AHX9H
1.52 billion
42.044%
17.386%
40.57%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXOHPSJTN
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIIMHGVZ5
1.37 billion
9.458%
11.221%
12.336%
30.418%
0.061%
Experiment
4DNEX4KRGMAQ
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFI8GKPW1P
4.66 billion
8.769%
8.743%
9.87%
39.917%
0.069%