ExperimentSetReplicate

ExperimentSet4DNESEPDL6KY
released

HiC from mature olfactory sensory neurons

   March 19th, 2018 at 8:04pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
primary cell
Biosource 
olfactory receptor cell
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESEPDL6KY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOWTBACC
557.7m
37.768%
25.729%
36.503%
Experiment
4DNEX5ICY4Q2
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIVN95UEZ
281.55m
33.299%
34.338%
32.363%
Experiment
4DNEXVCPZOH3
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFI2HQA2EE
276.15m
42.324%
16.952%
40.724%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX5ICY4Q2
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIMVGHWL1
491.38m
8.627%
20.05%
8.757%
5.269%
0.095%
Experiment
4DNEXVCPZOH3
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFI3N66SRD
492.61m
13.362%
19.599%
4.537%
6.443%
0.094%