ExperimentSetReplicate

ExperimentSet4DNES54YB6TQ
released

HiC from mature olfactory sensory neurons expressing Olfr16

   March 19th, 2018 at 8:04pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
primary cell
Biosource 
olfactory receptor cell
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES54YB6TQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOW2L46Z
1.59 billion
40.815%
22.422%
36.763%
Experiment
4DNEXMM7MN7V
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIBEV8M9E
1.14 billion
41.735%
21.723%
36.542%
Experiment
4DNEXBSGTVWJ
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFI3O8M6SZ
448.18m
38.478%
24.197%
37.324%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXMM7MN7V
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIGPW25I6
3.19 billion
8.263%
10.197%
17.976%
27.864%
0.069%
Experiment
4DNEXBSGTVWJ
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIQOAVB34
1.11 billion
7.641%
11.059%
17.54%
23.518%
0.081%