ExperimentSetReplicate

ExperimentSet4DNES425UDGS
released

HiC from immediate neuronal precursors

   March 19th, 2018 at 8:04pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
primary cell
Biosource 
immediate neuronal precursor cell
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES425UDGS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1QBCSKR
618.88m
46.46%
19.594%
33.946%
Experiment
4DNEXKO3TRJT
Bio Rep 1, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIDFRSE2G
251.02m
44.638%
16.843%
38.519%
Experiment
4DNEXTDMNUOO
Bio Rep 2, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIBO9M2WY
367.86m
47.703%
21.472%
30.825%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKO3TRJT
Bio Rep 1, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Alignments (bam)
4DNFI1J4UTL9
486.64m
9.487%
20.318%
9.828%
8.785%
0.091%
Experiment
4DNEXTDMNUOO
Bio Rep 2, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Alignments (bam)
4DNFIG3CTKZC
654.12m
12.127%
18.116%
4.714%
8.806%
0.082%