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Properties

Organ/System
Modifications
Warnings
17 Common Properties
 Project
4DN
 Lab
Christine Disteche, UW
 Experiment Category
Sequencing
 Experiment Type
DNase Hi-C
 Organism
Mouse
 Sample Type
immortalized cells
 Sample Tier
Unclassified
 Sample Category
Other
 Sample
Patski
 Tissue Source
kidney
 Publication
Bonora G et al. (2018) PMID:29654302
 Treatments
No value
 Assay Details
Enzyme: DNaseI
 Center
NOFIC - Shendure
 Status
Released
 Commendations
No value
 Validation Errors
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr deletion of 37 kb including Ds-TR gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr generated inversion of CTCF site in GRCm38:X:75674046-75674952
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr inversion of 44 kb including Dxz4 gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr deletion of 44 kb including Dxz4 gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
Crispr deletion of 127 kb 'hinge' region near Dxz4 gene
Enzyme
DNaseI
DNase Hi-C
Patski
DNase Hi-C on Patski +/- Ds-TR and Dxz4 region modfications
WT
Enzyme
DNaseI
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